I’m personally an amoralist vegan so I can’t really speak to that exactly, but it comes down to practicality and health. Veganism is usually about reducing harm as far as is practical (I.e., without risk to your own health), so most vegans make exceptions for medical needs, etc.

Roaches can transmit diseases, they’re an actual biohazard. This doesn’t change that they’re living animals, but this does mean killing them when they’re invading a home is legitimate defense. You may shun someone who goes tiger-hunting, but if a tiger comes into town, threateningly approaches people and get shot, you’d think this was necessary, although regrettable. You might want to investigate the cause for the tiger’s unusual town venture, maybe blame deforestation, but the one who ends up shooting is likely not the one to blame. Same for roaches. Yes, they’re animals; and certainly fascinating ones in some regards, but if they start proliferating in our homes, bringing bacteria and molds everywhere… At some point it’s us or them.

And now we have evidence to suggest that we were wrong, thus there is a moral imperative to act based off this new information. There is no evidence that bacteria or similar organisms are capable of pain or suffering. If you want to just disregard all science and biology, that’s your prerogative I suppose.

some would argue that eating honey is not immoral

Sure.

The point of going vegetarian or vegan is to aim at a reduction of animal suffering and environmental footprint. Not to starve by choice. Agriculture is still better than more agriculture needed to consume meat.
What’s the problem exactly?