I think ideas about prevention should be more concerned with the social engineering aspect of this attack. The code itself is certainly cleverly hidden, but any bad actor who gains the kind of access as Jia did could likely pull off something similar without duplicating their specific method or technique.
Ideally you need a double-blind checking mechanism definitionally impervious to social engineering.
That may be possible in larger projects but I doubt you can do much in where you have very few maintainers.
I bet the lesson here for future attackers is: do not affect start-up time.