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There are plenty of things that scans will not pick up that you still likely don’t want your apps doing.
However an alternative app store I use is F-Droid. Which only hosts apps that are open source. This means that it is significantly less likely that anything bad will be on the apps. Since the source code is available for anyone to review. It also means that everything on there is legally free anyway. 😀
This is indeed the correct answer. It is under the transcoding options. Your server will essentially need to re-transcode the video on the fly to add in subtitles. Which requires a not insignificant amount of processing power.
I ran into this issue while running jellyfin on a raspberry pi.
So long as your server has hardware acceleration turned on. To allow jellyfin to use your GPU for transcoding. You should be fine.